Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs11076654 chr16:90074085 A/T 3.58E-6 178 25.6 25 4.67 KM Plot
PCPG rs11076663 chr16:90121131 A/C 9.9E-9 175 25.87 20.2 6.62 KM Plot
PCPG rs11079995 chr17:50315044 C/T 6.48E-5 177 25.4 28.47 14.47 KM Plot
PCPG rs1108063 chr16:89893983 A/G 5.09E-5 171 26.57 20.28 36.37 KM Plot
PCPG rs1108189 chr2:107248650 T/G 0.000212 178 26.57 21.95 25.87 KM Plot
PCPG rs11088247 chr21:34603249 C/G 9.43E-8 178 17.22 34.37 24.1 KM Plot
PCPG rs11088343 chr21:37635652 C/T 0 178 25.4 25.43 3.17 KM Plot
PCPG rs1108966 chr21:38470120 G/A 9.32E-9 176 25.17 25.87 3.83 KM Plot
PCPG rs11101085 chr10:50522287 A/G 4.68E-6 178 24.53 31.42 25.17 KM Plot
PCPG rs11101086 chr10:50527064 T/C 3.71E-6 175 24.53 35.5 25.17 KM Plot
PCPG rs11101115 chr10:50579080 C/G 3.87E-6 178 24.53 33.13 25.17 KM Plot
PCPG rs11123452 chr2:118557594 C/G 1.77E-5 177 25.28 25.97 11.65 KM Plot
PCPG rs11124124 chr2:107229856 T/A 0.000239 176 26.57 23.53 25.87 KM Plot
PCPG rs111260190 chr16:1768133 T/C 2.08E-11 173 25.6 18.2 4.52 KM Plot
PCPG rs111266578 chr13:114180121 A/G 4.67E-12 177 24.17 30.33 3.32 KM Plot